# Developers

**URL:** https://community.epinowcast.org/c/developers/6.md

[Latest](https://community.epinowcast.org/latest.md) · [Categories](https://community.epinowcast.org/categories.md) · [Tags](https://community.epinowcast.org/tags.md)

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## [About the Developers category](https://community.epinowcast.org/t/about-the-developers-category/20)

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**Author:** [@samabbott](https://community.epinowcast.org/u/samabbott)\
**Replies:** 0\
**Last updated:** [22 August 2022 20:03 UTC](https://community.epinowcast.org/t/about-the-developers-category/20 "2022-08-22T20:03:50Z")

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This category is for discussion relevant to the development of Epinowcast. This includes the present and future of the core Epinowcast code and its interfaces.

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## [Adding importation to EpiNow2 and epinowcast](https://community.epinowcast.org/t/adding-importation-to-epinow2-and-epinowcast/235)

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**Author:** [@kcharniga2](https://community.epinowcast.org/u/kcharniga2)\
**Replies:** 3\
**Last updated:** [10 July 2024 14:23 UTC](https://community.epinowcast.org/t/adding-importation-to-epinow2-and-epinowcast/235 "2024-07-10T14:23:57Z")

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Is anyone planning to add a feature to EpiNow2 and epinowcast that would account for imported cases? That would be super useful. Thanks! Edit: our team has been providing real-time modeling support for a cholera epidemi…

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## [Modelling censored primary observations in a discrete time nowcasting model](https://community.epinowcast.org/t/modelling-censored-primary-observations-in-a-discrete-time-nowcasting-model/163)

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**Author:** [@samabbott](https://community.epinowcast.org/u/samabbott)\
**Replies:** 7\
**Last updated:** [17 July 2023 15:49 UTC](https://community.epinowcast.org/t/modelling-censored-primary-observations-in-a-discrete-time-nowcasting-model/163 "2023-07-17T15:49:21Z")

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This is just a note so I don’t forget - will circle back. All based on work with @sangwoopark with any good bits being theirs and any fever dreams being mine. The problem In current discrete type joint primary incidenc…

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## [Epinowcast.org updates and epinowcast 0.2.1](https://community.epinowcast.org/t/epinowcast-org-updates-and-epinowcast-0-2-1/147)

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**Author:** [@samabbott](https://community.epinowcast.org/u/samabbott)\
**Replies:** 2\
**Last updated:** [3 May 2023 09:57 UTC](https://community.epinowcast.org/t/epinowcast-org-updates-and-epinowcast-0-2-1/147 "2023-05-03T09:57:44Z")

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As part of the epinowcast 0.2.1 release which many of us have been working away at for a while I gave the website (i.e. epinowcast.org) a lick of paint. The main changes were to introduce seminar and meetings pages to m…

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## [Epinowcast 0.2.1 proposed roadmap](https://community.epinowcast.org/t/epinowcast-0-2-1-proposed-roadmap/131)

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**Author:** [@samabbott](https://community.epinowcast.org/u/samabbott)\
**Replies:** 1\
**Last updated:** [12 April 2023 21:04 UTC](https://community.epinowcast.org/t/epinowcast-0-2-1-proposed-roadmap/131 "2023-04-12T21:04:46Z")

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I have some unexpected time spare to do some epinowcast development. I’ve got a proposed roadmap here which I would appreciate some thoughts on (a few of the issues need decisions to be made before code can be implemente…

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## [Handling delayed entry of symptom onset dates in line lists](https://community.epinowcast.org/t/handling-delayed-entry-of-symptom-onset-dates-in-line-lists/99)

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**Author:** [@adrianlison](https://community.epinowcast.org/u/adrianlison)\
**Replies:** 9\
**Last updated:** [8 February 2023 12:10 UTC](https://community.epinowcast.org/t/handling-delayed-entry-of-symptom-onset-dates-in-line-lists/99 "2023-02-08T12:10:45Z")

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@FelixGuenther drew our attention to a potential idiosyncrasy of line list data that he came across during his nowcasting work: it may be the case that the reference date (e.g. symptom onset date) is entered “retrospecti…

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## [0.3.0 Roadmap (scheduled release date: 2023-03-01)](https://community.epinowcast.org/t/0-3-0-roadmap-scheduled-release-date-2023-03-01/111)

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**Author:** [@samabbott](https://community.epinowcast.org/u/samabbott)\
**Replies:** 0\
**Last updated:** [11 January 2023 13:53 UTC](https://community.epinowcast.org/t/0-3-0-roadmap-scheduled-release-date-2023-03-01/111 "2023-01-11T13:53:12Z")

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Hi all, As suggested in 0.2.0 package pre-release this is a post to discuss our roadmap for the next release (0.3.0). We need to think about which features we want and over what timescale we aim to put this release out. …

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## [Assessing how much nowcasts are informed by observations](https://community.epinowcast.org/t/assessing-how-much-nowcasts-are-informed-by-observations/100)

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**Author:** [@adrianlison](https://community.epinowcast.org/u/adrianlison)\
**Replies:** 2\
**Last updated:** [11 January 2023 11:37 UTC](https://community.epinowcast.org/t/assessing-how-much-nowcasts-are-informed-by-observations/100 "2023-01-11T11:37:19Z")

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When plotting our nowcasts, we probably want to distinguish between estimates based on complete data (everything beyond the maximum delay), estimates based on partial data (the actual nowcast), and (once we have forecast…

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## [Epinowcast fediverse](https://community.epinowcast.org/t/epinowcast-fediverse/97)

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**Author:** [@samabbott](https://community.epinowcast.org/u/samabbott)\
**Replies:** 2\
**Last updated:** [9 January 2023 11:11 UTC](https://community.epinowcast.org/t/epinowcast-fediverse/97 "2023-01-09T11:11:11Z")

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I’ve been transitioning to mastodon and exploring hosting an instance. It seemed like the epinowcast platform could be a good home for this instance? The key pause has been having to commit to moderation which I strongl…

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## [Optional profiling in cmdstanr](https://community.epinowcast.org/t/optional-profiling-in-cmdstanr/98)

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**Author:** [@adrianlison](https://community.epinowcast.org/u/adrianlison)\
**Replies:** 1\
**Last updated:** [18 November 2022 13:24 UTC](https://community.epinowcast.org/t/optional-profiling-in-cmdstanr/98 "2022-11-18T13:24:55Z")

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This is just a heads up to all the stan-coders / advanced users here. I have created a “standalone” version of the code we use for making profiling in the epinowcast stan model optional. Basically just a conventient wra…

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## [Handling downward corrections](https://community.epinowcast.org/t/handling-downward-corrections/63)

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**Author:** [@johannes](https://community.epinowcast.org/u/johannes)\
**Replies:** 7\
**Last updated:** [6 October 2022 12:15 UTC](https://community.epinowcast.org/t/handling-downward-corrections/63 "2022-10-06T12:15:05Z")

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We have one case study (SARI hospitalizations in Germany) where it seems like there are periods when data get systematically corrected downwards rather than upwards as we usually see. So somehow some hospitalizations get…

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## [Handling negative delays between reference and report](https://community.epinowcast.org/t/handling-negative-delays-between-reference-and-report/37)

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**Author:** [@adrianlison](https://community.epinowcast.org/u/adrianlison)\
**Replies:** 1\
**Last updated:** [29 September 2022 10:18 UTC](https://community.epinowcast.org/t/handling-negative-delays-between-reference-and-report/37 "2022-09-29T10:18:21Z")

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Porting the discussion started here. @samabbott wrote: There is some interest in linking events where the report happens before the reference. An example of this is test positivity and symptom onset. Potentially this…

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## [Use of enw\_ prefix](https://community.epinowcast.org/t/use-of-enw-prefix/42)

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**Author:** [@adrianlison](https://community.epinowcast.org/u/adrianlison)\
**Replies:** 2\
**Last updated:** [24 August 2022 09:21 UTC](https://community.epinowcast.org/t/use-of-enw-prefix/42 "2022-08-24T09:21:56Z")

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Porting the discussion from here. @samabbott wrote At the moment we follow some other packages and make use of a prefix for many of our functions. The motivation for this is to avoid namespace conflicts as well as giv…

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## [Maximum delay treatment](https://community.epinowcast.org/t/maximum-delay-treatment/39)

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**Author:** [@adrianlison](https://community.epinowcast.org/u/adrianlison)\
**Replies:** 4\
**Last updated:** [23 August 2022 16:01 UTC](https://community.epinowcast.org/t/maximum-delay-treatment/39 "2022-08-23T16:01:58Z")

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Porting the discussion from here. @samabbott wrote: At the moment we exclude observations beyond the user set maximum delay in both preprocessing and modelling. This has the advantage in that observations are fixed vs…

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## [Modular post-processing](https://community.epinowcast.org/t/modular-post-processing/38)

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**Author:** [@adrianlison](https://community.epinowcast.org/u/adrianlison)\
**Replies:** 0\
**Last updated:** [23 August 2022 15:48 UTC](https://community.epinowcast.org/t/modular-post-processing/38 "2022-08-23T15:48:13Z")

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Porting the discussion from here. @samabbott wrote: We now have a modular system of pre-processing and it would be nice if we could do the same for stan code and postprocessing. Of these modular stan code is the harde…

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## [Handling multimodal delay distributions](https://community.epinowcast.org/t/handling-multimodal-delay-distributions/36)

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**Author:** [@adrianlison](https://community.epinowcast.org/u/adrianlison)\
**Replies:** 1\
**Last updated:** [23 August 2022 15:37 UTC](https://community.epinowcast.org/t/handling-multimodal-delay-distributions/36 "2022-08-23T15:37:53Z")

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Porting the discussion started here: @adrianlison wrote One main motivation for adding a non-parametric component to epinowcast in addition to the current parametric model is that delay distributions could be multimod…
